2RJP

Crystal structure of ADAMTS4 with inhibitor bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structures of the two major aggrecan degrading enzymes, ADAMTS4 and ADAMTS5.

Mosyak, L.Georgiadis, K.Shane, T.Svenson, K.Hebert, T.McDonagh, T.Mackie, S.Olland, S.Lin, L.Zhong, X.Kriz, R.Reifenberg, E.L.Collins-Racie, L.A.Corcoran, C.Freeman, B.Zollner, R.Marvell, T.Vera, M.Sum, P.E.Lavallie, E.R.Stahl, M.Somers, W.

(2008) Protein Sci 17: 16-21

  • DOI: 10.1110/ps.073287008
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • Aggrecanases are now believed to be the principal proteinases responsible for aggrecan degradation in osteoarthritis. Given their potential as a drug target, we solved crystal structures of the two most active human aggrecanase isoforms, ADAMTS4 and ...

    Aggrecanases are now believed to be the principal proteinases responsible for aggrecan degradation in osteoarthritis. Given their potential as a drug target, we solved crystal structures of the two most active human aggrecanase isoforms, ADAMTS4 and ADAMTS5, each in complex with bound inhibitor and one wherein the enzyme is in apo form. These structures show that the unliganded and inhibitor-bound enzymes exhibit two essentially different catalytic-site configurations: an autoinhibited, nonbinding, closed form and an open, binding form. On this basis, we propose that mature aggrecanases exist as an ensemble of at least two isomers, only one of which is proteolytically active.


    Organizational Affiliation

    Department of Chemical and Screening Sciences, Wyeth Research, Cambridge, MA 02140, USA. lmosyak@wyeth.com



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ADAMTS-4A, B, C, D316Homo sapiensMutation(s): 1 
Gene Names: ADAMTS4KIAA0688UNQ769/PRO1563
EC: 3.4.24.82
Find proteins for O75173 (Homo sapiens)
Explore O75173 
Go to UniProtKB:  O75173
NIH Common Fund Data Resources
PHAROS  O75173
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
886
Query on 886

Download CCD File 
A, B, C, D
N-({4'-[(4-isobutyrylphenoxy)methyl]biphenyl-4-yl}sulfonyl)-D-valine
C28 H31 N O6 S
JGTIIKHYSZFICL-AREMUKBSSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
886IC50:  100   nM  BindingDB
886IC50 :  100   nM  PDBBind
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.209 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.566α = 90
b = 82.618β = 90.63
c = 99.326γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SHARPphasing
SOLOMONphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-12-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance