Download MendeleyCrystal Structure of the Domain Comprising the Regions Binding NAD and FAD from the NADH:Ubiquinone Oxidoreductase, Na Translocating, F Subunit from Porphyromonas gingivalis.
Kim, Y., Mulligan, R., Moy, S., Joachimiak, A.To be published.
2R6H
Crystal structure of the domain comprising the NAD binding and the FAD binding regions of the NADH:ubiquinone oxidoreductase, Na translocating, F subunit from Porphyromonas gingivalis
- PDB DOI: https://doi.org/10.2210/pdb2R6H/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Porphyromonas gingivalis W83
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-09-05 Released: 2007-09-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.271
- R-Value Work: 0.215
- R-Value Observed: 0.221
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADH:ubiquinone oxidoreductase, Na translocating, F subunit | A, B, C, D | 290 | Porphyromonas gingivalis W83 | Mutation(s): 0 Gene Names: nqrF, PG_2177 EC: 1.6.5 (PDB Primary Data), 7.2.1.1 (UniProt) |  |
UniProt | |||||
Find proteins for Q7MT22 (Porphyromonas gingivalis (strain ATCC BAA-308 / W83)) Explore Q7MT22 Go to UniProtKB: Q7MT22 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7MT22 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | H [auth A], K [auth B], P [auth C], S [auth D] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], I [auth B], J [auth B], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.95 Å
- R-Value Free: 0.271
- R-Value Work: 0.215
- R-Value Observed: 0.221
- Space Group: I 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 175.681 | α = 90 |
| b = 175.681 | β = 90 |
| c = 244.292 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-2000 | data collection |
| SHARP | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2007-09-11 Deposition Author(s): Kim, Y., Mulligan, R., Moy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-09-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
