2R5F

Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Putative sugar-binding domain of trancsriptional regulator DeoR from Pseudomonas syringae pv. tomato.

Cuff, M.E.Duggan, E.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcriptional regulator, putative
A
264Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)Mutation(s): 0 
Find proteins for Q883G8 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Go to UniProtKB:  Q883G8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.195 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 42.112α = 90.00
b = 42.112β = 90.00
c = 144.782γ = 90.00
Software Package:
Software NamePurpose
HKL-3000phasing
PDB_EXTRACTdata extraction
SHELXDphasing
SCALEPACKdata scaling
MLPHAREphasing
DMphasing
RESOLVEphasing
SHELXEmodel building
REFMACrefinement
CCP4phasing
HKL-3000data scaling
Omodel building
Cootmodel building
ARP/wARPmodel building
DENZOdata reduction
SOLVEphasing
SBC-Collectdata collection
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-09-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description