2R4Q | pdb_00002r4q

The structure of a domain of fruA from Bacillus subtilis

PDB DOI: https://doi.org/10.2210/pdb2R4Q/pdb

Classification: TRANSFERASE, TRANSPORT PROTEIN
Organism(s): Bacillus subtilis subsp. subtilis str. 168
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-08-31 Released: 2007-09-18
Deposition Author(s): Cuff, M.E., Sather, A., Nocek, B., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.233 (Depositor), 0.227 (DCC)
R-Value Work:
0.198 (Depositor), 0.196 (DCC)
R-Value Observed:
0.200 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2R4Q

This is version 1.3 of the entry. See complete history.

Literature

The structure of a domain of fruA from Bacillus subtilis.

Cuff, M.E., Sather, A., Nocek, B., Clancy, S., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 11.61 kDa
Atom Count: 1,051
Modeled Residue Count: 102
Deposited Residue Count: 106
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphotransferase system (PTS) fructose-specific enzyme IIABC component	A	106	Bacillus subtilis subsp. subtilis str. 168	Mutation(s): 0 Gene Names: fruA, BSU14400 EC: 2.7.1.202
UniProt
Find proteins for P71012 (Bacillus subtilis (strain 168)) Explore P71012 Go to UniProtKB: P71012
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P71012
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.233 (Depositor), 0.227 (DCC)
R-Value Work: 0.198 (Depositor), 0.196 (DCC)
R-Value Observed: 0.200 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.661	α = 90
b = 43.661	β = 90
c = 110.896	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
SOLVE	phasing
RESOLVE	phasing
ARP/wARP	model building
CCP4	phasing
O	model building
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-09-18

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-09-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.2: 2017-10-25
Changes: Refinement description
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.