Macromolecule Content

Total Structure Weight: 46.20 kDa
Atom Count: 3459
Modelled Residue Count: 382
Deposited Residue Count: 398
Unique protein chains: 1

2R2A

Crystal structure of N-terminal domain of zonular occludens toxin from Neisseria meningitidis

PDB DOI: 10.2210/pdb2R2A/pdb

Classification: TOXIN
Organism(s): Neisseria meningitidis MC58
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-08-24 Released: 2007-09-04
Deposition Author(s): Osipiuk, J., Patterson, S., Wu, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free: 0.214
R-Value Work: 0.176
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of N-terminal domain of zonular occludens toxin from Neisseria meningitidis.

Osipiuk, J., Patterson, S., Wu, R., Clancy, S., Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	199	Neisseria meningitidis MC58	Mutation(s): 0 Gene Names: NMB1551, NMB1626
UniProt
Find proteins for Q9JRY6 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JRY6 Go to UniProtKB: Q9JRY6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9JRY6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free: 0.214
R-Value Work: 0.176
R-Value Observed: 0.178
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.976	α = 90
b = 48.258	β = 134.31
c = 95.894	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data collection
HKL-3000	data reduction
HKL-3000	data scaling
SHELXD	phasing
MLPHARE	phasing
DM	phasing
SOLVE	phasing
RESOLVE	phasing
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2007-08-24
Released Date: 2007-09-04

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-09-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.