2Q85

Crystal Structure of E. Coli Mur B bound to a Naphthyl Tetronic Acid inihibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of E. Coli Mur B bound to a napthyl tetronic acid inhibitor

Mansour, T.Caulfield, C.E.Rasmussen, B.Chopra, R.Krishnamurthy, G.Morris, K.M.Svenson, K.Bard, J.Smeltzer, C.Naughton, S.Antane, S.Yang, Y.Severin, A.Quagliato, D.Petersen, P.J.Singh, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-N-acetylenolpyruvoylglucosamine reductase
A
342Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: murB (yijB)
EC: 1.3.1.98
Find proteins for P08373 (Escherichia coli (strain K12))
Go to UniProtKB:  P08373
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
973
Query on 973

Download SDF File 
Download CCD File 
A
(5Z)-3-(4-CHLOROPHENYL)-4-HYDROXY-5-(1-NAPHTHYLMETHYLENE)FURAN-2(5H)-ONE
C21 H13 Cl O3
PLGHLEBIWUQEPR-PDGQHHTCSA-N
 Ligand Interaction
FAD
Query on FAD

Download SDF File 
Download CCD File 
A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.166 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 41.993α = 90.00
b = 89.301β = 111.11
c = 50.943γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
SCALEPACKdata scaling
CrystalCleardata collection
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-06-26
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance