2PPX

Crystal structure of a HTH XRE-family like protein from Agrobacterium tumefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of a HTH XRE-family like protein from Agrobacterium tumefaciens.

Cuff, M.E.Skarina, T.Onopriyenko, O.Edwards, A.Savchenko, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein Atu1735
A
99Agrobacterium fabrum (strain C58 / ATCC 33970)Mutation(s): 0 
Find proteins for A9CIQ1 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  A9CIQ1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.196 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 70.696α = 90.00
b = 70.696β = 90.00
c = 103.736γ = 120.00
Software Package:
Software NamePurpose
SOLVEphasing
HKL-3000phasing
DMphasing
SBC-Collectdata collection
MLPHAREphasing
ARP/wARPmodel building
REFMACrefinement
Omodel building
HKL-3000data reduction
Cootmodel building
RESOLVEphasing
SHELXDphasing
CCP4phasing
HKL-3000data scaling
SHELXEmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-05-29
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance