2PNW

Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.

Bonanno, J.B.Dickey, M.Bain, K.T.Iizuka, M.Ozyurt, S.Smith, D.Wasserman, S.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Membrane-bound lytic murein transglycosylaseA380Agrobacterium fabrum str. C58Mutation(s): 0 
Gene Names: mltAAGR_C_15Atu0009
EC: 4.2.2
Find proteins for A9CKT8 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Explore A9CKT8 
Go to UniProtKB:  A9CKT8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 
  • Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.665α = 90
b = 88.665β = 90
c = 221.434γ = 120
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
DENZOdata reduction
CCP4data scaling
SHELXCDphasing
SHELXDphasing
SHELXEmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-05-08
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2012-10-24
    Changes: Structure summary
  • Version 1.4: 2017-10-18
    Changes: Refinement description
  • Version 1.5: 2018-11-14
    Changes: Data collection, Structure summary
  • Version 1.6: 2021-02-03
    Changes: Database references, Derived calculations, Structure summary