Download MendeleyCrystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneri
Kim, Y., Li, H., Holzle, D., Joachimiak, A.To be published.
2PDO
Crystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneri
- PDB DOI: https://doi.org/10.2210/pdb2PDO/pdb
- Classification: TRANSFERASE
- Organism(s): Shigella flexneri 2a str. 2457T
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2007-04-01 Released: 2007-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.266
- R-Value Work: 0.193
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetyltransferase ypeA | 144 | Shigella flexneri 2a str. 2457T | Mutation(s): 6 Gene Names: ypeA, SF2487, S_2635 EC: 2.3.1 |  | |
UniProt | |||||
Find proteins for P63422 (Shigella flexneri) Explore P63422 Go to UniProtKB: P63422 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63422 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | I [auth B], J [auth B], M [auth E], R [auth G], S [auth H] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | L [auth D] N [auth E] O [auth F] P [auth F] Q [auth F] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACY Query on ACY | K [auth B], V [auth H] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.266
- R-Value Work: 0.193
- R-Value Observed: 0.200
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.053 | α = 90 |
| b = 134.388 | β = 105.93 |
| c = 70.467 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-04-24 Deposition Author(s): Kim, Y., Li, H., Holzle, D., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-04-24
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
