2PBR

Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5

Jeyakanthan, J.Kanaujia, S.P.Vasuki Ranjani, C.Sekar, K.Nakagawa, N.Ebihara, A.Kuramitsu, S.Shinkai, A.Shiro, Y.Yokoyama, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thymidylate kinase
A, B
195Aquifex aeolicus (strain VF5)Mutation(s): 0 
Gene Names: tmk
EC: 2.7.4.9
Find proteins for O67099 (Aquifex aeolicus (strain VF5))
Go to UniProtKB:  O67099
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.194 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 42.765α = 95.19
b = 50.478β = 90.81
c = 52.823γ = 111.68
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
MOLREPphasing
SCALEPACKdata scaling
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-10-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Derived calculations, Source and taxonomy, Version format compliance