2PAG | pdb_00002pag

Crystal structure of protein PSPTO_5518 from Pseudomonas syringae pv. tomato

• PDB DOI: https://doi.org/10.2210/pdb2PAG/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Pseudomonas syringae pv. tomato str. DC3000
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2007-03-27 Released: 2007-04-03 
• Deposition Author(s): Fedorov, A.A., Ramagopal, U., Toro, R., Fedorov, E.V., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.222 (Depositor), 0.222 (DCC) 
• R-Value Work: 
  0.233 (Depositor), 0.233 (DCC) 
• R-Value Observed: 
  0.233 (Depositor) 

Literature

Crystal structure of conserved hypothetical protein from Pseudomonas syringae pv. tomato.

Fedorov, A.A., Ramagopal, U., Toro, R., Fedorov, E.V., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 15.69 kDa 
• Atom Count: 1,211 
• Modeled Residue Count: 132 
• Deposited Residue Count: 135 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein	A	135	Pseudomonas syringae pv. tomato str. DC3000	Mutation(s): 1  Gene Names: PSPTO5518
UniProt
Find proteins for Q87TZ9 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q87TZ9  Go to UniProtKB:  Q87TZ9

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	B [auth A], C [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.222 (Depositor), 0.222 (DCC) 
• R-Value Work:  0.233 (Depositor), 0.233 (DCC) 
• R-Value Observed: 0.233 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.424	α = 90
b = 47.424	β = 90
c = 122.518	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
DENZO	data reduction
SCALEPACK	data scaling
SHELXS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-04-03 
Deposition Author(s): Fedorov, A.A., Ramagopal, U., Toro, R., Fedorov, E.V., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-04-03
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-03
  Changes: Database references, Derived calculations, Structure summary
• Version 1.5: 2021-10-20
  Changes: Database references
• Version 1.6: 2024-02-21
  Changes: Data collection