2P65 | pdb_00002p65

Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax

PDB DOI: https://doi.org/10.2210/pdb2P65/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Plasmodium falciparum
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-03-16 Released: 2007-04-03
Deposition Author(s): Wernimont, A.K., Lew, J., Kozieradzki, I., Lin, Y.H., Hassanali, A., Zhao, Y., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Artz, J.D., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.239 (Depositor), 0.266 (DCC)
R-Value Work:
0.201 (Depositor)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax

Wernimont, A.K., Lew, J., Kozieradzki, I., Lin, Y.H., Hassanali, A., Zhao, Y., Arrowsmith, C.H., Edwards, A.M., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Artz, J.D.

To be published.

Macromolecule Content

Total Structure Weight: 20.44 kDa
Atom Count: 1,548
Modeled Residue Count: 185
Deposited Residue Count: 187
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PF08_0063	A	187	Plasmodium falciparum	Mutation(s): 0 Gene Names: PV089580:Y168-S353
UniProt
Find proteins for Q8IB03 (Plasmodium falciparum (isolate 3D7)) Explore Q8IB03 Go to UniProtKB: Q8IB03
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IB03
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.239 (Depositor), 0.266 (DCC)
R-Value Work: 0.201 (Depositor)
R-Value Observed: 0.203 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.728	α = 90
b = 52.213	β = 90
c = 91.92	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-04-03

Deposition Author(s):

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2007-04-03
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-08-30
Changes: Data collection, Database references, Refinement description