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Download EndnoteCrystal structure of hypothetical protein (NP_939744.1) from Corynebacterium diphtheriae at 2.30 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2P4G
CRYSTAL STRUCTURE OF A PYRIMIDINE REDUCTASE-LIKE PROTEIN (DIP1392) FROM CORYNEBACTERIUM DIPHTHERIAE NCTC AT 2.30 A RESOLUTION
- DOI: 10.2210/pdb2P4G/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
- Expression System: Escherichia coli
- Deposited: 2007-03-12 Released: 2007-03-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.225
- R-Value Work: 0.173
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Hypothetical protein | A | 270 | Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) | Mutation(s): 0 |
Find proteins for Q6NGV8 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Go to UniProtKB: Q6NGV8 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| NO3 Query on NO3 | A | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.225
- R-Value Work: 0.173
- Space Group: P 64
- Diffraction Data DOI:
10.18430/M32P4G Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 113.510 | α = 90.00 |
| b = 113.510 | β = 90.00 |
| c = 55.940 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| REFMAC | refinement |
| ADSC | data collection |
| SOLVE | phasing |
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2007-03-12
- Released Date: 2007-03-27
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2007-03-27
Type: Initial release - Version 1.1: 2008-05-01
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Type: Refinement description - Version 1.4: 2017-10-25
Type: Author supporting evidence
