Download MendeleyCrystal structure of hypothetical protein (NP_638301.1) from Xanthomonas campestris at 1.40 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2OZH | pdb_00002ozh
Crystal structure of a putative acetyltransferase belonging to the gnat family (xcc2953) from xanthomonas campestris pv. campestris at 1.40 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2OZH/pdb
- Classification: TRANSFERASE
- Organism(s): Xanthomonas campestris pv. campestris
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-02-26 Released: 2007-03-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.143 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein XCC2953 | 142 | Xanthomonas campestris pv. campestris | Mutation(s): 4 Gene Names: NP_638301.1, XCC2953 |  | |
UniProt | |||||
Find proteins for Q8P6L4 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P6L4 Go to UniProtKB: Q8P6L4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8P6L4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| UNL Query on UNL | D [auth A] | Unknown ligand LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.155 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.150 (DCC)
- R-Value Observed: 0.143 (Depositor)
Diffraction Data: https://doi.org/10.18430/M32OZH
Space Group: I 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.957 | α = 90 |
| b = 101.957 | β = 90 |
| c = 101.957 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| SOLVE | phasing |
| REFMAC | refinement |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2007-03-20 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-03-20
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations - Version 1.5: 2024-10-16
Changes: Data collection, Structure summary
