2OZ8

Crystal structure of putative mandelate racemase from Mesorhizobium loti


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history

Literature

Crystal structure of putative mandelate racemase from Mesorhizobium loti

Bonanno, J.B.Freeman, J.Bain, K.T.Wu, B.Sridhar, V.Smith, D.Wasserman, S.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mll7089 protein
A, B
389Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)Mutation(s): 0 
Find proteins for Q987E0 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099))
Go to UniProtKB:  Q987E0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.174 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 160.176α = 90.00
b = 160.176β = 90.00
c = 82.560γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
CCP4data scaling
SCALAdata scaling
MOSFLMdata reduction
SHELXDphasing
MAR345data collection
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-03-13
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.3: 2012-10-24
    Type: Structure summary
  • Version 1.4: 2017-10-18
    Type: Refinement description
  • Version 1.5: 2018-11-14
    Type: Data collection, Structure summary