2OYZ

Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus (targeted domain 2-94)

• PDB DOI: https://doi.org/10.2210/pdb2OYZ/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Vibrio parahaemolyticus RIMD 2210633
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2007-02-23 Released: 2007-03-20 
• Deposition Author(s): Chang, C., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 0.237 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 

Literature

Crystal structure of unknown function protein VPA0057 from Vibrio parahaemolyticus

Chang, C., Volkart, L., Abdullah, J., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.25 kDa 
• Atom Count: 917 
• Modelled Residue Count: 94 
• Deposited Residue Count: 94 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0345 protein VPA0057	A	94	Vibrio parahaemolyticus RIMD 2210633	Mutation(s): 2  Gene Names: VPA0057
UniProt
Find proteins for Q87K41 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87K41  Go to UniProtKB:  Q87K41

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.71 Å
• R-Value Free: 0.237 
• R-Value Work: 0.203 
• R-Value Observed: 0.205 
• Space Group: P 4₃ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.302	α = 90
b = 37.302	β = 90
c = 135.555	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-03-20 
Deposition Author(s): Chang, C., Volkart, L., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2007-03-20
  Type: Initial release
  
• Version 1.1: 2007-11-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Source and taxonomy, Version format compliance