Download MendeleyCrystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
2OYO
Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution
- PDB DOI: https://doi.org/10.2210/pdb2OYO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Deinococcus geothermalis DSM 11300
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2007-02-22 Released: 2007-03-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.51 Å
- R-Value Free: 0.215
- R-Value Work: 0.182
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized peroxidase-related protein | A, B | 196 | Deinococcus geothermalis DSM 11300 | Mutation(s): 3 Gene Names: YP_604910.1, Dgeo_1446 |  |
UniProt | |||||
Find proteins for Q1IYE3 (Deinococcus geothermalis (strain DSM 11300 / AG-3a)) Explore Q1IYE3 Go to UniProtKB: Q1IYE3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1IYE3 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | C [auth A], D [auth A], E [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.51 Å
- R-Value Free: 0.215
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: H 3 2
- Diffraction Data: https://doi.org/10.18430/M32OYO
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 135.649 | α = 90 |
| b = 135.649 | β = 90 |
| c = 118.084 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| REFMAC | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| XDS | data reduction |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-03-20 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-03-20
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2017-10-18
Changes: Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations
