2OOI | pdb_00002ooi

The crystal structure of gene product SA0254 from Staphylocococcus aureus subsp. aureus N315

• PDB DOI: https://doi.org/10.2210/pdb2OOI/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Staphylococcus aureus subsp. aureus N315
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2007-01-25 Released: 2007-02-27 
• Deposition Author(s): Zhang, R., Duggan, E., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.270 (Depositor), 0.269 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Literature

The crystal structure of gene product SA0254 from Staphylocococcus aureus subsp. aureus N315

Zhang, R., Duggan, E., Gu, M., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 38.1 kDa 
• Atom Count: 2,643 
• Modeled Residue Count: 315 
• Deposited Residue Count: 324 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SA0254 protein	A, B	162	Staphylococcus aureus subsp. aureus N315	Mutation(s): 0  Gene Names: SA0254

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	C [auth A], D [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.270 (Depositor), 0.269 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 116.104	α = 90
b = 116.104	β = 90
c = 86.185	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-02-27 
Deposition Author(s): Zhang, R., Duggan, E., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2007-02-27
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations