2OOG

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Staphylococcus Aureus

Patskovsky, Y.Sauder, J.M.Smith, D.Freeman, J.Maletic, M.Powell, A.Gheyi, T.Wasserman, S.R.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycerophosphoryl diester phosphodiesterase
A, B, C, D, E, F
287Staphylococcus aureus (strain Newman)Mutation(s): 0 
Gene Names: glpQ
Find proteins for A0A0H3K7S1 (Staphylococcus aureus (strain Newman))
Go to UniProtKB:  A0A0H3K7S1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D, E, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, D, E, F
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.235 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 156.312α = 90.00
b = 183.546β = 90.00
c = 176.790γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data scaling
PHASERphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2007-02-06
    Type: Initial release
  • Version 1.1: 2007-11-14
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.3: 2018-11-14
    Type: Data collection, Structure summary