2ONJ | pdb_00002onj

Structure of the multidrug ABC transporter Sav1866 from S. aureus in complex with AMP-PNP

• PDB DOI: https://doi.org/10.2210/pdb2ONJ/pdb

• Classification: HYDROLASE
• Organism(s): Staphylococcus aureus
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  PDBTMMemProtMDmpstruc


• Deposited: 2007-01-24 Released: 2007-03-13 
• Deposition Author(s): Dawson, R.J.P., Locher, K.P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free: 
  0.278 (Depositor) 
• R-Value Work: 
  0.254 (Depositor), 0.245 (DCC) 

Literature

Structure of the multidrug ABC transporter Sav1866 from Staphylococcus aureus in complex with AMP-PNP.

Dawson, R.J.P., Locher, K.P.

(2007) FEBS Lett 581: 935-938

• PubMed: 17303126 
• DOI: https://doi.org/10.1016/j.febslet.2007.01.073
• Primary Citation Related Structures: 
  2ONJ


• PubMed Abstract: 
  

  Staphylococcus aureus Sav1866 is a bacterial homolog of the human ABC transporter Mdr1 that causes multidrug resistance in cancer cells. We report the crystal structure of Sav1866 in complex with adenosine-5'-(beta,gamma-imido)triphosphate (AMP-PNP) at 3.4A resolution and compare it with the previously determined structure of Sav1866 with bound ADP. Besides differences in the ATP-binding sites, no significant conformational changes were observed. The results confirm that the ATP-bound state of multidrug ABC transporters is coupled to an outward-facing conformation of the transmembrane domains.

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Organizational Affiliation: 
• Institute of Molecular Biology and Biophysics, ETH Zurich HPK D14.3, 8093 Zurich, Switzerland.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 130.97 kDa 
• Atom Count: 9,254 
• Modeled Residue Count: 1,156 
• Deposited Residue Count: 1,156 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Multidrug export ATP-binding/permease protein SAV1866	A, B	578	Staphylococcus aureus	Mutation(s): 0  EC: 3.6.3 (PDB Primary Data), 7.6.2 (UniProt) Membrane Entity: Yes
UniProt
Find proteins for Q99T13 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore Q99T13  Go to UniProtKB:  Q99T13

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ANP	E [auth A], H [auth B]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N
NA	C [auth A], D [auth A], F [auth B], G [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.40 Å
• R-Value Free:  0.278 (Depositor) 
• R-Value Work:  0.254 (Depositor), 0.245 (DCC) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 160.961	α = 90
b = 104.447	β = 98.23
c = 181.391	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-03-13 
Deposition Author(s): Dawson, R.J.P., Locher, K.P.

Revision History  

• Version 1.0: 2007-03-13
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations