2OMO

Putative antibiotic biosynthesis monooxygenase from Nitrosomonas europaea

PDB DOI: https://doi.org/10.2210/pdb2OMO/pdb

Classification: OXIDOREDUCTASE
Organism(s): Nitrosomonas europaea
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2007-01-22 Released: 2007-01-30
Deposition Author(s): Osipiuk, J., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free: 0.228
R-Value Work: 0.190
R-Value Observed: 0.191

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

X-ray structure of putative antibiotic biosynthesis monooxygenase from Nitrosomonas europaea.

Osipiuk, J., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 116.15 kDa
Atom Count: 7,428
Modelled Residue Count: 807
Deposited Residue Count: 992
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DUF176	A, B, C, D, E A, B, C, D, E, F, G, H	124	Nitrosomonas europaea	Mutation(s): 4 Gene Names: NE0621
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.83 Å
R-Value Free: 0.228
R-Value Work: 0.190
R-Value Observed: 0.191
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.155	α = 90
b = 99.248	β = 90
c = 192.672	γ = 90

Software Package:

Software Name	Purpose
SHELXD	phasing
MLPHARE	phasing
DM	model building
SOLVE	phasing
RESOLVE	model building
HKL-2000	data scaling
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing
HKL-3000	phasing
REFMAC	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-01-30

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2007-01-30
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.