2OJU

X-ray structure of complex of human cyclophilin J with cyclosporin A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Targeting Cyclophilin J, a Novel Peptidyl-Prolyl Isomerase, Can Induce Cellular G1/S Arrest and Repress the Growth of Hepatocellular Carcinoma

Chen, J.Chen, S.Huang, L.Zhao, X.Tan, J.Huang, C.Saiyin, H.Zhang, M.Zeng, X.Xi, J.Wan, B.Zhao, Y.Xia, Z.Jiang, H.Yi, Q.Liu, J.O.Yu, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3A, B167Homo sapiensMutation(s): 0 
Gene Names: PPIL3BPPIL3
EC: 5.2.1.8
Find proteins for Q9H2H8 (Homo sapiens)
Explore Q9H2H8 
Go to UniProtKB:  Q9H2H8
NIH Common Fund Data Resources
PHAROS  Q9H2H8
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by: Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CYCLOSPORIN AC, D11Tolypocladium inflatumMutation(s): 0 
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000142
Query on PRD_000142
C, DCyclosporin AC /  Immunosuppressant

--

Modified Residues  5 Unique
IDChainsTypeFormula2D DiagramParent
ABA
Query on ABA
C,DL-PEPTIDE LINKINGC4 H9 N O2ALA
BMT
Query on BMT
C,DL-PEPTIDE LINKINGC10 H19 N O3THR
MLE
Query on MLE
C,DL-PEPTIDE LINKINGC7 H15 N O2LEU
MVA
Query on MVA
C,DL-PEPTIDE LINKINGC6 H13 N O2VAL
SAR
Query on SAR
C,DPEPTIDE LINKINGC3 H7 N O2GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.193 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.387α = 90
b = 64.387β = 90
c = 200.943γ = 120
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2007-01-14 
  • Released Date: 2008-01-22 
  • Deposition Author(s): Xia, Z., Huang, L.

Revision History 

  • Version 1.0: 2008-01-22
    Type: Initial release
  • Version 1.1: 2011-06-14
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-07-27
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • Version 1.4: 2012-12-12
    Changes: Other