2O39
Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)
- PDB DOI: https://doi.org/10.2210/pdb2O39/pdb
- Classification: VIRAL PROTEIN/immune system
- Organism(s): Human adenovirus 11p, Homo sapiens
- Expression System: Escherichia coli, Cricetulus griseus
- Mutation(s): No 
- Deposited: 2006-12-01 Released: 2007-01-09 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.273 
- R-Value Work: 0.238 
- R-Value Observed: 0.238 
wwPDB Validation   3D Report Full Report
This is version 2.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fiber protein | 197 | Human adenovirus 11p | Mutation(s): 0  Gene Names: PIV | ||
UniProt | |||||
Find proteins for P35774 (Human adenovirus B serotype 11 (strain Slobiski)) Explore P35774  Go to UniProtKB:  P35774 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P35774 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Membrane cofactor protein | 126 | Homo sapiens | Mutation(s): 0  Gene Names: CD46, MCP | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P15529 (Homo sapiens) Explore P15529  Go to UniProtKB:  P15529 | |||||
PHAROS:  P15529 GTEx:  ENSG00000117335  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P15529 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | G [auth C], H [auth D], I [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.85 Å
- R-Value Free: 0.273 
- R-Value Work: 0.238 
- R-Value Observed: 0.238 
- Space Group: P 3
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 106.14 | α = 90 |
b = 106.14 | β = 90 |
c = 68.32 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
AMoRE | phasing |
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
Entry History 
Deposition Data
- Released Date: 2007-01-09  Deposition Author(s): Persson, D.B., Reiter, D.M., Arnberg, N., Stehle, T.
Revision History (Full details and data files)
- Version 1.0: 2007-01-09
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-12-27
Changes: Data collection, Database references, Structure summary - Version 2.2: 2024-04-03
Changes: Refinement description