2O18

Crystal structure of a Thiamine biosynthesis lipoprotein apbE, NorthEast Strcutural Genomics target ER559


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of a Thiamine biosynthesis lipoprotein apbE

Seetharaman, J.Su, M.Wang, D.Fang, Y.Cunningham, K.Ma, L.Xiao, R.Liu, J.Baran, M.C.Acton, T.B.Rost, B.Montelione, G.T.Hunt, J.F.Tong, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thiamine biosynthesis lipoprotein apbE
A, B, C, D
340Escherichia coli (strain K12)Gene Names: apbE (yojK, yojL)
EC: 2.7.1.180
Find proteins for P0AB85 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AB85
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.233 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 57.320α = 75.76
b = 70.653β = 71.67
c = 86.637γ = 69.46
Software Package:
Software NamePurpose
CNSrefinement
CBASSdata collection
HKL-2000data scaling
SOLVEphasing
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-12-05
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance