2MUA | pdb_00002mua

Shifting the Polarity of some Critical Residues in Malarial Peptides Binding to Host Cells is a Key Factor in Breaking Conserved Antigens


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Shifting the polarity of some critical residues in malarial peptides' binding to host cells is a key factor in breaking conserved antigens' code of silence.

Cifuentes, G.Bermudez, A.Rodriguez, R.Patarroyo, M.A.Patarroyo, M.E.

(2008) Med Chem 4: 278-292

  • DOI: https://doi.org/10.2174/157340608784325160
  • Primary Citation Related Structures: 
    2MUA

  • PubMed Abstract: 

    As microbes use many mechanisms for avoiding immunological pressure, new strategies must be developed to bypass the immunological code of silence of conserved, functionally-important amino acid sequences, such as those involved in high activity binding peptides' (HABPs) attaching to their host cells. Hundreds of experiments in large numbers of Aotus monkeys revealed that this immunological code of silence could be broken by shifting the polarity of some critical host cell binding residues in these HABPs by substituting F for R and vice versa, Y<-->W, L<-->H, I<-->N, P<-->D, M<-->K or E, C<-->T, V<-->N or S; there are special rules for A, G and S. (1)H-nuclear magnetic resonance of these modified, immunogenic, protection-inducing HABPs and molecular modelling revealed that such modifications induced appropriate fitting into specific HLA-DRbeta1 Pockets, suggesting the presence of new pockets and a haplotype- and allele-specific conscious TCR. A highly immunogenic and protection-inducing anti-malarial vaccine can thus be produced.


  • Organizational Affiliation
    • Fundación Instituto de Inmunologia de Colombia (FIDIC), Carrera 50 No. 26-00 Bogotá, Colombia.

Macromolecule Content 

  • Total Structure Weight: 2.46 kDa 
  • Atom Count: 170 
  • Modeled Residue Count: 21 
  • Deposited Residue Count: 21 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Ring-infected erythrocyte surface antigen21Plasmodium falciparum FC27/Papua New GuineaMutation(s): 0 
UniProt
Find proteins for P13830 (Plasmodium falciparum (isolate FC27 / Papua New Guinea))
Explore P13830 
Go to UniProtKB:  P13830
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13830
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-16
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Database references