2M97

Optimized Ratiometric Calcium Sensors For Functional In Vivo Imaging of Neurons and T-Lymphocytes


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.

Thestrup, T.Litzlbauer, J.Bartholomaus, I.Mues, M.Russo, L.Dana, H.Kovalchuk, Y.Liang, Y.Kalamakis, G.Laukat, Y.Becker, S.Witte, G.Geiger, A.Allen, T.Rome, L.C.Chen, T.W.Kim, D.S.Garaschuk, O.Griesinger, C.Griesbeck, O.

(2014) Nat.Methods 11: 175-182

  • DOI: 10.1038/nmeth.2773

  • PubMed Abstract: 
  • The quality of genetically encoded calcium indicators (GECIs) has improved dramatically in recent years, but high-performing ratiometric indicators are still rare. Here we describe a series of fluorescence resonance energy transfer (FRET)-based calci ...

    The quality of genetically encoded calcium indicators (GECIs) has improved dramatically in recent years, but high-performing ratiometric indicators are still rare. Here we describe a series of fluorescence resonance energy transfer (FRET)-based calcium biosensors with a reduced number of calcium binding sites per sensor. These 'Twitch' sensors are based on the C-terminal domain of Opsanus troponin C. Their FRET responses were optimized by a large-scale functional screen in bacterial colonies, refined by a secondary screen in rat hippocampal neuron cultures. We tested the in vivo performance of the most sensitive variants in the brain and lymph nodes of mice. The sensitivity of the Twitch sensors matched that of synthetic calcium dyes and allowed visualization of tonic action potential firing in neurons and high resolution functional tracking of T lymphocytes. Given their ratiometric readout, their brightness, large dynamic range and linear response properties, Twitch sensors represent versatile tools for neuroscience and immunology.


    Organizational Affiliation

    Max Planck Institute for Biophysical Chemistry, NMR-based Structural Biology, Göttingen, Germany.,1] Max Planck Institute of Neurobiology, Martinsried, Germany. [2] Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.,Max Planck Institute of Neurobiology, Martinsried, Germany.,Institute of Physiology II, University of Tübingen, Tübingen, Germany.,Oberlin College, Oberlin, Ohio, USA.,Gene Center, Department of Biochemistry, University of Munich, Munich, Germany.,1] Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA. [2] The Whitman Center, Marine Biological Lab, Woods Hole, Massachusetts, USA.,Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Optimized Ratiometric Calcium Sensor
A
69Opsanus tauMutation(s): 0 
Find proteins for W5IDB2 (Opsanus tau)
Go to UniProtKB:  W5IDB2
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 3000 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-01-01
    Type: Initial release
  • Version 1.1: 2014-02-05
    Type: Database references
  • Version 1.2: 2014-02-12
    Type: Database references