2LP6 | pdb_00002lp6

Refined Solution NMR Structure of the 50S ribosomal protein L35Ae from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target (NESG) PfR48

• PDB DOI: https://doi.org/10.2210/pdb2LP6/pdb
• BMRB: 6173

• Classification: RIBOSOMAL PROTEIN
• Organism(s): Pyrococcus furiosus DSM 3638
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2012-02-02 Released: 2012-02-15 
• Deposition Author(s): Snyder, D.A., Aramini, J.M., Yu, B., Huang, Y.J., Xiao, R., Cort, J.R., Shastry, R., Ma, L., Liu, J., Rost, B., Acton, T.B., Kennedy, M.A., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.

Snyder, D.A., Aramini, J.M., Yu, B., Huang, Y.J., Xiao, R., Cort, J.R., Shastry, R., Ma, L.C., Liu, J., Rost, B., Acton, T.B., Kennedy, M.A., Montelione, G.T.

(2012) Proteins 80: 1901-1906

• PubMed: 22422653 
• DOI: https://doi.org/10.1002/prot.24071
• Primary Citation Related Structures: 
  2LP6


• PubMed Abstract: 
  

  The ribosome consists of small and large subunits each composed of dozens of proteins and RNA molecules. However, the functions of many of the individual protomers within the ribosome are still unknown. In this article, we describe the solution NMR structure of the ribosomal protein RP-L35Ae from the archaeon Pyrococcus furiosus. RP-L35Ae is buried within the large subunit of the ribosome and belongs to Pfam protein domain family PF01247, which is highly conserved in eukaryotes, present in a few archaeal genomes, but absent in bacteria. The protein adopts a six-stranded anti-parallel β-barrel analogous to the "tRNA binding motif" fold. The structure of the P. furiosus RP-L35Ae presented in this article constitutes the first structural representative from this protein domain family.

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Organizational Affiliation: 
• Department of Chemistry, College of Science and Health, William Paterson University, Wayne, New Jersey 07470, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 10.83 kDa 
• Atom Count: 721 
• Modeled Residue Count: 91 
• Deposited Residue Count: 95 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
50S ribosomal protein L35Ae	A	95	Pyrococcus furiosus DSM 3638	Mutation(s): 0  Gene Names: PF1872, rpl35Ae
UniProt
Find proteins for Q8TZV6 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8TZV6  Go to UniProtKB:  Q8TZV6

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-02-15 
Deposition Author(s): Snyder, D.A., Aramini, J.M., Yu, B., Huang, Y.J., Xiao, R., Cort, J.R., Shastry, R., Ma, L., Liu, J., Rost, B., Acton, T.B., Kennedy, M.A., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2012-02-15
  Type: Initial release
  
• Version 1.1: 2012-04-11
  Changes: Database references
• Version 1.2: 2012-06-20
  Changes: Database references
• Version 1.3: 2023-06-14
  Changes: Data collection, Database references, Other
• Version 1.4: 2024-05-15
  Changes: Data collection, Database references