Biological Assembly 1  

 3D View: Structure

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 11138.30 
• Atom Count: 779 
• Residue Count: 104 
• Unique protein chains: 1

2LNV

Solution structure of GspC-HR of typeII secretion system

• DOI: 10.2210/pdb2LNV/pdb
• BMRB: 18181

• Classification: TRANSPORT PROTEIN
• Organism(s): Dickeya dadantii (strain 3937)
• Expression System: Escherichia coli


• Deposited: 2012-01-05 Released: 2012-01-25 
• Deposition Author(s): Gu, S., Kelly, G., Pickersgill, R.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

Solution Structure of Homology Region (HR) Domain of Type II Secretion System.

Gu, S., Kelly, G., Wang, X., Frenkiel, T., Shevchik, V.E., Pickersgill, R.W.

(2012) J.Biol.Chem. 287: 9072-9080

• PubMed: 22253442 
• DOI: 10.1074/jbc.M111.300624


• PubMed Abstract: 
  

The type II secretion system of Gram-negative bacteria is important for bacterial pathogenesis and survival; it is composed of 12 mostly multimeric core proteins, which build a sophisticated secretion machine spanning both bacterial membranes. OutC is the core component of the inner membrane subcomplex thought to be involved in both recognition of substrate and interaction with the outer membrane secretin OutD. Here, we report the solution structure of the HR domain of OutC and explore its interaction with the secretin. The HR domain adopts a β-sandwich-like fold consisting of two β-sheets each composed of three anti-parallel β-strands. This structure is strikingly similar to the periplasmic region of PilP, an inner membrane lipoprotein from the type IV pilus system highlighting the common evolutionary origin of these two systems and showing that all the core components of the type II secretion system have a structural or sequence ortholog within the type IV pili system. The HR domain is shown to interact with the N0 domain of the secretin. The importance of this interaction is explored in the context of the functional secretion system.

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Organizational Affiliation: 

School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
General secretion pathway protein C	A	104	Dickeya dadantii (strain 3937)	Mutation(s): 0  Gene Names: outC
Find proteins for Q01564 (Dickeya dadantii (strain 3937)) Go to UniProtKB:  Q01564

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 
• Olderado: 2LNV Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2012-01-05 
• Released Date: 2012-01-25 
• Deposition Author(s): Gu, S., Kelly, G., Pickersgill, R.

Revision History 

• Version 1.0: 2012-01-25
  Type: Initial release
• Version 1.1: 2012-04-11
  Type: Database references