2LI6

1H, 13C, and 15N Chemical Shift Assignments for yeast protein

PDB DOI: https://doi.org/10.2210/pdb2LI6/pdb
BMRB: 17880

Classification: DNA BINDING PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-08-24 Released: 2012-04-25
Deposition Author(s): Wang, T., Zhang, J., Tu, X.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Solution structure of SWI1 ARID domain from Saccharomyces cerevisiae and its non-specific binding to DNA

Wang, T., Zhang, J., Zhang, X., Tu, X.

(2012) Proteins

PubMed: 22488857 Search on PubMed
DOI: https://doi.org/10.1002/prot.24091
Primary Citation of Related Structures:
2LI6

PubMed Abstract:
SWI1 is a subunit of the SWI/SNF complex involved in chromatin remodeling. It contains an AT-rich interaction domain (ARID) which has the potential DNA binding activity. In this study, we determined the solution structure of the SWI1 ARID domain from Saccharomyces cerevisiae by nuclear magnetic resonance spectroscopy. Yeast SWI1 ARID domain is composed of seven alpha helices, six of which are conserved among the ARID family. In addition, the DNA-binding activity of the SWI1 ARID domain was confirmed by chemical shift perturbation assay. Similar to its human homolog, the yeast SWI1 ARID domain binds DNA nonspecifically.

Organizational Affiliation

Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.

Macromolecule Content

Total Structure Weight: 13.82 kDa
Atom Count: 968
Modelled Residue Count: 116
Deposited Residue Count: 116
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SWI/SNF chromatin-remodeling complex subunit SWI1	A	116	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: ADR6, GAM3, SWI1, YPL016W, LPA1
UniProt
Find proteins for P09547 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P09547 Go to UniProtKB: P09547
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09547
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-04-25

Deposition Author(s):

Wang, T.

Zhang, J.

Tu, X.

Revision History (Full details and data files)

Version 1.0: 2012-04-25
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references