2KUO | pdb_00002kuo

Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response

PDB DOI: https://doi.org/10.2210/pdb2KUO/pdb
BMRB: 16744

Classification: METAL BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-02-23 Released: 2010-05-05
Deposition Author(s): Li, G.Y., McCulloch, R.D., Fenton, A., Cheung, M., Meng, L., Ikura, M., Koch, C.A.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2KUO

This is version 1.3 of the entry. See complete history.

Literature

Structure and identification of ADP-ribose recognition motifs of aprataxin PNK-like factor (APLF) required for the interaction with sites of DNA damage response

Li, G.Y., McCulloch, R.D., Fenton, A., Cheung, M., Meng, L., Ikura, M., Koch, C.A.

To be published.

Macromolecule Content

Total Structure Weight: 10.4 kDa
Atom Count: 721
Modeled Residue Count: 91
Deposited Residue Count: 91
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aprataxin and PNK-like factor	A	91	Homo sapiens	Mutation(s): 0 Gene Names: APLF, APLF(C2orf13), C2orf13, PALF, XIP1 EC: 3.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IW19 (Homo sapiens) Explore Q8IW19 Go to UniProtKB: Q8IW19
PHAROS: Q8IW19 GTEx: ENSG00000169621
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IW19
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] mmCIF format, chain B [auth A] mmCIF format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-05-05

Deposition Author(s):

McCulloch, R.D.

Revision History (Full details and data files)

Version 1.0: 2010-05-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.