2KUO

Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response

• PDB DOI: https://doi.org/10.2210/pdb2KUO/pdb
• BMRB: 16744

• Classification: METAL BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-02-23 Released: 2010-05-05 
• Deposition Author(s): Li, G.Y., McCulloch, R.D., Fenton, A., Cheung, M., Meng, L., Ikura, M., Koch, C.A.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structure and identification of ADP-ribose recognition motifs of aprataxin PNK-like factor (APLF) required for the interaction with sites of DNA damage response

Li, G.Y., McCulloch, R.D., Fenton, A., Cheung, M., Meng, L., Ikura, M., Koch, C.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.4 kDa 
• Atom Count: 721 
• Modelled Residue Count: 91 
• Deposited Residue Count: 91 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aprataxin and PNK-like factor	A	91	Homo sapiens	Mutation(s): 0  Gene Names: APLF, APLF(C2orf13), C2orf13, PALF, XIP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IW19 (Homo sapiens) Explore Q8IW19  Go to UniProtKB:  Q8IW19
PHAROS:  Q8IW19 GTEx:  ENSG00000169621

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-05-05 
Deposition Author(s): Li, G.Y., McCulloch, R.D., Fenton, A., Cheung, M., Meng, L., Ikura, M., Koch, C.A.

Revision History  

• Version 1.0: 2010-05-05
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations