2KR3 | pdb_00002kr3

Solution structure of SHA-D

• PDB DOI: https://doi.org/10.2210/pdb2KR3/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Gallus gallus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-12-03 Released: 2010-09-15 
• Deposition Author(s): Khristoforov, V.S., Prokhorov, D.A., Timchenko, M.A., Kudrevatykh, Y.A., Gushchina, L.V., Filimonov, V.V., Kutyshenko, V.P.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Literature

Chimeric SHA-D domain "SH3-Bergerac": 3D structure and dynamics studies

Khristoforov, V.S., Prokhorov, D.A., Timchenko, M.A., Kudrevatykh, Y.A., Gushchina, L.V., Filimonov, V.V., Kutyshenko, V.P.

(2010) Russ J Bioorg Chem 36: 468-476

• PubMed: 20823919 
• Primary Citation Related Structures: 
  2KR3


• PubMed Abstract: 
  

  Protein SHA-D of "SH3-Bergerac" chimeric proteins family was constructed by substitution of beta-turn N47-D48 in spectrin SH3-domain by KATANDKTYE amino acid sequence. Structural and dynamics properties of SHA-D in solution were studied by with the help of high-resolution NMR. The extension of SHA-D polypeptide chain in comparison with wild type of protein WT-SH3 (~ 17%) practically doesn't affect almost the total molecule topology. 3D-structure of SHA-D is practically identical to the proteins of "SH3-Bergerac" family. However there are some differences in dynamic characteristics in the region of substitution. The G52D substitution in SHA-D protein results in a destabilization of the region insertion where the conditions for conformational exchange appear. Destabilization further affects the entire SHA- D molecule making its structure more labile.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 8.12 kDa 
• Atom Count: 570 
• Modeled Residue Count: 70 
• Deposited Residue Count: 70 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spectrin alpha chain, brain	A	70	Gallus gallus	Mutation(s): 0  Gene Names: sha-d
UniProt
Find proteins for P07751 (Gallus gallus) Explore P07751  Go to UniProtKB:  P07751

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-09-15 
Deposition Author(s): Khristoforov, V.S., Prokhorov, D.A., Timchenko, M.A., Kudrevatykh, Y.A., Gushchina, L.V., Filimonov, V.V., Kutyshenko, V.P.

Revision History  

• Version 1.0: 2010-09-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references