Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.83 kDa 
• Atom Count: 1049 
• Modelled Residue Count: 125 
• Deposited Residue Count: 125 
• Unique protein chains: 1

2KFP

Solution NMR structure of PSPTO_3016 from Pseudomonas syringae. Northeast Structural Genomics Consortium target PsR293.

• PDB DOI: 10.2210/pdb2KFP/pdb
• BMRB: 16186

• Classification: Structural Genomics, UNKNOWN FUNCTION
• Organism(s): Pseudomonas syringae pv. tomato
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-02-24 Released: 2009-03-24 
• Deposition Author(s): Feldmann, E.A., Ramelot, T.A., Zhao, L., Hamilton, K., Ciccosanti, C., Xiao, R., Nair, R., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 150 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif.

Feldmann, E.A., Seetharaman, J., Ramelot, T.A., Lew, S., Zhao, L., Hamilton, K., Ciccosanti, C., Xiao, R., Acton, T.B., Everett, J.K., Tong, L., Montelione, G.T., Kennedy, M.A.

(2012) J Struct Funct Genomics 13: 155-162

• PubMed: 22865330 
• DOI: 10.1007/s10969-012-9140-8
• Primary Citation of Related Structures:  
  2KFP, 3H9X


• PubMed Abstract: 
  

The protein Pspto_3016 is a 117-residue member of the protein domain family PF04237 (DUF419), which is to date a functionally uncharacterized family of proteins. In this report, we describe the structure of Pspto_3016 from Pseudomonas syringae solved by both solution NMR and X-ray crystallography at 2.5 Å resolution. In both cases, the structure of Pspto_3016 adopts a "double wing" α/β sandwich fold similar to that of protein YjbR from Escherichia coli and to the C-terminal DNA binding domain of the MotA transcription factor (MotCF) from T4 bacteriophage, along with other uncharacterized proteins. Pspto_3016 was selected by the Protein Structure Initiative of the National Institutes of Health and the Northeast Structural Genomics Consortium (NESG ID PsR293).

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Organizational Affiliation: 

Department of Chemistry and Biochemistry, Miami University, Oxford, OH 45056, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PSPTO_3016 protein	A	125	Pseudomonas syringae pv. tomato	Mutation(s): 0  Gene Names: PSPTO3016, PSPTO_3016
UniProt
Find proteins for Q880Y4 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q880Y4  Go to UniProtKB:  Q880Y4

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 150 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2KFP Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2009-02-24 
• Released Date: 2009-03-24 
Deposition Author(s): Feldmann, E.A., Ramelot, T.A., Zhao, L., Hamilton, K., Ciccosanti, C., Xiao, R., Nair, R., Everett, J.K., Swapna, G., Acton, T.B., Rost, B., Montelione, G.T., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2009-03-24
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-10-17
  Changes: Database references
• Version 1.3: 2020-02-26
  Changes: Data collection, Database references, Other