2KDB

Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A

PDB DOI: https://doi.org/10.2210/pdb2KDB/pdb
BMRB: 16109

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-01-06 Released: 2009-02-10
Deposition Author(s): Wu, B., Yee, A., Fares, C., Lemak, A., Gutmanas, A., Doherty, R., Semesi, A., Dhe-Paganon, S., Arrowsmith, C., Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of human homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 (Herpud2 or Herp)

Doherty, R., Wu, B., Fares, C., Lemak, A., Gutmanas, A., Semesi, A., Yee, A., Arrowsmith, C.H., Dhe-Paganon, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.57 kDa
Atom Count: 634
Modelled Residue Count: 77
Deposited Residue Count: 99
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein	A	99	Homo sapiens	Mutation(s): 0 Gene Names: HERPUD2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSE4 (Homo sapiens) Explore Q9BSE4 Go to UniProtKB: Q9BSE4
PHAROS: Q9BSE4 GTEx: ENSG00000122557
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9BSE4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-02-10

Deposition Author(s):

Dhe-Paganon, S.

Northeast Structural Genomics Consortium (NESG)

Structural Genomics Consortium (SGC)

Revision History (Full details and data files)

Version 1.0: 2009-02-10
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2012-05-23
Changes: Database references
Version 1.3: 2024-05-01
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.