2K6Q | pdb_00002k6q

LC3 p62 complex structure

• PDB DOI: https://doi.org/10.2210/pdb2K6Q/pdb
• BMRB: 15877

• Classification: APOPTOSIS INHIBITOR/APOPTOSIS
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-07-17 Released: 2008-09-02 
• Deposition Author(s): Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Structural basis of target recognition by ATG8/LC3 during selective autophagy

Noda, N., Kumeta, H., Nakatogawa, H., Adachi, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 16.13 kDa 
• Atom Count: 1,131 
• Modeled Residue Count: 138 
• Deposited Residue Count: 138 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Microtubule-associated proteins 1A/1B light chain 3B	A	121	Rattus norvegicus	Mutation(s): 0  Gene Names: Map1lc3b, Map1alc3, Map1lc3
UniProt
Find proteins for Q62625 (Rattus norvegicus) Explore Q62625  Go to UniProtKB:  Q62625

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
p62_peptide from Sequestosome-1	B	17	Rattus norvegicus	Mutation(s): 0
UniProt
Find proteins for O08623 (Rattus norvegicus) Explore O08623  Go to UniProtKB:  O08623

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-09-02 
Deposition Author(s): Noda, N., Kumeta, H., Nakatogawa, H., Satoo, K., Adachi, W., Ishii, J., Fujioka, Y., Ohsumi, Y., Inagaki, F.

Revision History  

• Version 1.0: 2008-09-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2020-02-26
  Changes: Data collection, Database references, Derived calculations, Other
• Version 1.3: 2023-06-14
  Changes: Database references, Other
• Version 1.4: 2024-05-15
  Changes: Data collection, Database references