2JXN

Solution Structure of S. cerevisiae PDCD5-like Protein Ymr074cp

• PDB DOI: https://doi.org/10.2210/pdb2JXN/pdb
• Entry: 2JXN supersedes: 2HVU
• BMRB: 15562

• Classification: UNKNOWN FUNCTION
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2007-11-23 Released: 2008-12-02 
• Deposition Author(s): Hong, J., Zhang, J., Liu, Z., Shi, Y., Wu, J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 400 
• Conformers Submitted: 20 
• Selection Criteria: back calculated data agree with experimental NOESY spectrum 

Literature

Solution Structure and Dynamics of S. cerevisiae PDCD5-like Protein Ymr074cp Determined by Heteronuclear NMR Spectroscopy

Hong, J., Zhang, J., Liu, Z., Wu, J., Shi, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.39 kDa 
• Atom Count: 903 
• Modelled Residue Count: 116 
• Deposited Residue Count: 127 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein YMR074C	A	127	Saccharomyces cerevisiae	Mutation(s): 2  Gene Names: YMR074C
UniProt
Find proteins for Q04773 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04773  Go to UniProtKB:  Q04773

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MTN	B [auth A], C [auth A]	S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate C10 H18 N O3 S2 MXZPGYFBZHBAQM-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 400 
• Conformers Submitted: 20 
• Selection Criteria: back calculated data agree with experimental NOESY spectrum 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-12-02 
Deposition Author(s): Hong, J., Zhang, J., Liu, Z., Shi, Y., Wu, J.
• This entry supersedes: 2HVU

Revision History  

• Version 1.0: 2008-12-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 1.2: 2021-10-20
  Changes: Advisory, Data collection, Database references, Derived calculations
• Version 1.3: 2024-11-20
  Changes: Data collection, Structure summary