2JWQ

G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 
  • Conformers Submitted: 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

G-Quadruplex Recognition by Quinacridines: a SAR, NMR, and Biological Study

Hounsou, C.Guittat, L.Monchaud, D.Jourdan, M.Saettel, N.Mergny, J.L.Teulade-Fichou, M.

(2007) ChemMedChem 2: 655-666

  • DOI: 10.1002/cmdc.200600286
  • Primary Citation of Related Structures:  
    2JWQ

  • PubMed Abstract: 
  • The synthesis of a novel group of quinacridine-based ligands (MMQs) is described along with an evaluation of their G-quadruplex binding properties. A set of biophysical assays was applied to characterize their interaction with DNA quadruplexes: FRET- ...

    The synthesis of a novel group of quinacridine-based ligands (MMQs) is described along with an evaluation of their G-quadruplex binding properties. A set of biophysical assays was applied to characterize their interaction with DNA quadruplexes: FRET-melting experiments and equilibrium microdialysis were used to evaluate their quadruplex affinity and their ability to discriminate quadruplexes across a broad panel of DNA structures. All data collected support the proposed model of interaction of these compounds with G-quadruplexes, which is furthermore confirmed by a solution structure determined by 2D NMR experiments. Finally, the activity of the MMQ series against tumor cell growth is reported, and the data support the potential of quadruplex-interactive compounds for use in anticancer approaches.


    Organizational Affiliation

    Laboratoire de Chimie des Interactions Mol├ęculaires, CNRS UPR 285, Coll├Ęge de France, 11, place Marcellin Berthelot, 75005 Paris, France.



Macromolecules
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3')A, B, C, D7N/A
    Small Molecules
    Ligands 1 Unique
    IDChainsName / Formula / InChI Key2D Diagram3D Interactions
    MM0
    Query on MM0

    Download CCD File 
    B
    N,N'-(dibenzo[b,j][1,7]phenanthroline-2,10-diyldimethanediyl)dipropan-1-amine
    C28 H30 N4
    BAQHAHCFORIMOQ-UHFFFAOYSA-N
     Ligand Interaction
    External Ligand Annotations 
    IDBinding Affinity (Sequence Identity %)
    MM0IC50 :  373   nM  PDBBind
    Experimental Data & Validation

    Experimental Data

    • Method: SOLUTION NMR
    • Conformers Calculated: 
    • Conformers Submitted: 
    • Selection Criteria: all calculated structures submitted 
    • OLDERADO: 2JWQ Olderado

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2008-03-25
      Type: Initial release
    • Version 1.1: 2011-07-13
      Changes: Version format compliance