Macromolecule Content

• Total Structure Weight: 28571.69 
• Atom Count: 1670 
• Residue Count: 180 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

2JPP

Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA

• DOI: 10.2210/pdb2JPP/pdb
• BMRB: 15257
• NDB: 2JPP

• Classification: TRANSLATION/RNA
• Organism(s): Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CHA0)
• Expression System: Escherichia coli


• Deposited: 2007-05-21 Released: 2007-08-21 
• Deposition Author(s): Schubert, M., Lapouge, K., Duss, O., Oberstrass, F.C., Jelesarov, I., Haas, D., Allain, F.H.-T.

---

Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 

Literature

Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA

Schubert, M., Lapouge, K., Duss, O., Oberstrass, F.C., Jelesarov, I., Haas, D., Allain, F.H.-T.

(2007) Nat.Struct.Mol.Biol. 14: 807-813

• PubMed: 17704818 
• DOI: 10.1038/nsmb1285


• PubMed Abstract: 
  

Proteins of the RsmA/CsrA family are global translational regulators in many bacterial species. We have determined the solution structure of a complex formed between the RsmE protein, a member of this family from Pseudomonas fluorescens, and a target RNA encompassing the ribosome-binding site of the hcnA gene. The RsmE homodimer with its two RNA-binding sites makes optimal contact with an 5'-A/UCANGGANGU/A-3' sequence in the mRNA. When tightly gripped by RsmE, the ANGGAN core folds into a loop, favoring the formation of a 3-base-pair stem by flanking nucleotides. We validated these findings by in vivo and in vitro mutational analyses. The structure of the complex explains well how, by sequestering the Shine-Dalgarno sequence, the RsmA/CsrA proteins repress translation.

---

Organizational Affiliation: 

Institute of Molecular Biology and Biophysics, ETH Zürich, CH-8093 Zürich, Switzerland.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Translational repressor	A, B	70	Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CHA0)	Mutation(s): 0  Gene Names: csrA1 (rsmE)
Find proteins for P0DPC3 (Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CHA0)) Go to UniProtKB:  P0DPC3

Entity ID: 1
Molecule	Chains	Length	Organism
RNA (5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*CP*GP*GP*AP*UP*GP*AP*AP*GP*CP*CP*C)-3')	C,D	20	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 
• Olderado: 2JPP Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2007-05-21 
• Released Date: 2007-08-21 
• Deposition Author(s): Schubert, M., Lapouge, K., Duss, O., Oberstrass, F.C., Jelesarov, I., Haas, D., Allain, F.H.-T.

Revision History 

• Version 1.0: 2007-08-21
  Type: Initial release
• Version 1.1: 2011-07-13
  Type: Version format compliance