2JPP

Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA

Schubert, M.Lapouge, K.Duss, O.Oberstrass, F.C.Jelesarov, I.Haas, D.Allain, F.H.-T.

(2007) Nat Struct Mol Biol 14: 807-813

  • DOI: 10.1038/nsmb1285
  • Primary Citation of Related Structures:  
    2JPP

  • PubMed Abstract: 
  • Proteins of the RsmA/CsrA family are global translational regulators in many bacterial species. We have determined the solution structure of a complex formed between the RsmE protein, a member of this family from Pseudomonas fluorescens, and a target ...

    Proteins of the RsmA/CsrA family are global translational regulators in many bacterial species. We have determined the solution structure of a complex formed between the RsmE protein, a member of this family from Pseudomonas fluorescens, and a target RNA encompassing the ribosome-binding site of the hcnA gene. The RsmE homodimer with its two RNA-binding sites makes optimal contact with an 5'-A/UCANGGANGU/A-3' sequence in the mRNA. When tightly gripped by RsmE, the ANGGAN core folds into a loop, favoring the formation of a 3-base-pair stem by flanking nucleotides. We validated these findings by in vivo and in vitro mutational analyses. The structure of the complex explains well how, by sequestering the Shine-Dalgarno sequence, the RsmA/CsrA proteins repress translation.


    Organizational Affiliation

    Institute of Molecular Biology and Biophysics, ETH Zürich, CH-8093 Zürich, Switzerland.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Translational repressorAB70Pseudomonas fluorescensMutation(s): 0 
Gene Names: rsmE
Find proteins for P0DPC3 (Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CHA0))
Explore P0DPC3 
Go to UniProtKB:  P0DPC3
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    RNA (5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*CP*GP*GP*AP*UP*GP*AP*AP*GP*CP*CP*C)-3')C, D20N/A
    Experimental Data & Validation

    Experimental Data

    • Method: SOLUTION NMR
    • Conformers Calculated: 200 
    • Conformers Submitted: 10 
    • Selection Criteria: structures with the least restraint violations 
    • OLDERADO: 2JPP Olderado

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 2007-08-21
      Type: Initial release
    • Version 1.1: 2011-07-13
      Changes: Version format compliance