2JIF

Structure of human short-branched chain acyl-CoA dehydrogenase (ACADSB)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of Human Short-Branched Chain Acyl-Coa Dehydrogenase

Pike, A.C.W.Hozjan, V.Smee, C.Niesen, F.H.Kavanagh, K.L.Umeano, C.Turnbull, A.P.von Delft, F.Weigelt, J.Edwards, A.Arrowsmith, C.H.Sundstrom, M.Oppermann, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SHORT/BRANCHED CHAIN SPECIFIC ACYL-COA DEHYDROGENASE
A, B, C, D
404Homo sapiensMutation(s): 0 
EC: 1.3.99
UniProt & NIH Common Fund Data Resources
Find proteins for P45954 (Homo sapiens)
Explore P45954 
Go to UniProtKB:  P45954
PHAROS:  P45954
GTEx:  ENSG00000196177 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP45954
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
COS
Query on COS

Download Ideal Coordinates CCD File 
F [auth A],
K [auth B],
Q [auth C],
V [auth D]
COENZYME A PERSULFIDE
C21 H36 N7 O16 P3 S2
REVPHPVBPSIEKM-IBOSZNHHSA-N
FAD
Query on FAD

Download Ideal Coordinates CCD File 
E [auth A],
J [auth B],
P [auth C],
U [auth D]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
G [auth A]
L [auth B]
R [auth C]
W [auth D]
X [auth D]
G [auth A],
L [auth B],
R [auth C],
W [auth D],
X [auth D],
Y [auth D],
Z [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth D]
BA [auth D]
CA [auth D]
H [auth A]
I [auth A]
AA [auth D],
BA [auth D],
CA [auth D],
H [auth A],
I [auth A],
M [auth B],
N [auth B],
O [auth B],
S [auth C],
T [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.245α = 90
b = 150.245β = 90
c = 201.586γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2007-04-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2018-01-24
    Changes: Database references, Structure summary
  • Version 1.3: 2023-12-13
    Changes: Data collection, Database references, Other, Refinement description