2IGW

CYCLOPHILIN 3 complexed with DIPEPTIDE GLY-PRO


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Experimental Determination of van der Waals Energies in a Biological System.

Wear, M.A.Kan, D.Rabu, A.Walkinshaw, M.D.

(2007) Angew.Chem.Int.Ed.Engl. 46: 6453-6456


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-prolyl cis-trans isomerase 3
A
173Caenorhabditis elegansMutation(s): 0 
Gene Names: cyn-3 (cyp-3)
EC: 5.2.1.8
Find proteins for P52011 (Caenorhabditis elegans)
Go to UniProtKB:  P52011
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLY
Query on GLY

Download SDF File 
Download CCD File 
A
GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
 Ligand Interaction
PRO
Query on PRO

Download SDF File 
Download CCD File 
A
PROLINE
C5 H9 N O2
ONIBWKKTOPOVIA-BYPYZUCNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.225 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.724α = 90.00
b = 62.724β = 90.00
c = 122.756γ = 90.00
Software Package:
Software NamePurpose
SHELXL-97refinement
SHELXmodel building
SCALAdata scaling
SHELXphasing
MAR345dtbdata collection
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2006-09-25 
  • Released Date: 2007-08-14 
  • Deposition Author(s): Kan, D.

Revision History 

  • Version 1.0: 2007-08-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance