2ID3
Crystal structure of transcriptional regulator SCO5951 from Streptomyces coelicolor A3(2)
- DOI: 10.2210/pdb2ID3/pdb
- Classification: TRANSCRIPTION
- Organism(s): Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
- Expression System: Escherichia coli
- Deposited: 2006-09-14 Released: 2006-10-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Download Mendeley
Download EndnoteTo be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative transcriptional regulator | A, B | 225 | Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) | Mutation(s): 0 |
Find proteins for O54180 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Go to UniProtKB: O54180 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| CA Query on CA | A, B | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.199
- R-Value Work: 0.164
- Space Group: C 2 2 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 81.069 | α = 90.00 |
| b = 85.617 | β = 90.00 |
| c = 126.341 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| ARP/wARP | model building |
| HKL-2000 | data reduction |
| SHELXD | phasing |
| CCP4 | phasing |
| REFMAC | refinement |
| MLPHARE | phasing |
| HKL-2000 | data scaling |
| O | model building |
| RESOLVE | phasing |
| DM | phasing |
| HKL-3000 | phasing |
| HKL-2000 | data collection |
| SHELXE | model building |
| Coot | model building |
| SOLVE | phasing |
Entry History
Deposition Data
- Deposited Date: 2006-09-14
- Released Date: 2006-10-17
- Deposition Author(s): Grabowski, M., Chruszcz, M., Koclega, K.D., Cymborowski, M., Gu, J., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History
- Version 1.0: 2006-10-17
Type: Initial release - Version 1.1: 2008-05-01
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Version format compliance - Version 1.3: 2017-10-18
Type: Refinement description
