2ICA

CD11a (LFA1) I-domain complexed with BMS-587101 aka 5-[(5S, 9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro [4.4]non-7-yl]methyl]-3-thiophenecarboxylicacid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Discovery and Development of 5-[(5S,9R)-9- (4-Cyanophenyl)-3-(3,5-dichlorophenyl)-1- methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non- 7-yl-methyl]-3-thiophenecarboxylic acid (BMS-587101)-A Small Molecule Antagonist Leukocyte Function Associated Antigen-1.

Potin, D.Launay, M.Monatlik, F.Malabre, P.Fabreguettes, M.Fouquet, A.Maillet, M.Nicolai, E.Dorgeret, L.Chevallier, F.Besse, D.Dufort, M.Caussade, F.Ahmad, S.Z.Stetsko, D.K.Skala, S.Davis, P.M.Balimane, P.Patel, K.Yang, Z.Marathe, P.Postelneck, J.Townsend, R.M.Goldfarb, V.Sheriff, S.Einspahr, H.Kish, K.Malley, M.F.Dimarco, J.D.Gougoutas, J.Z.Kadiyala, P.Cheney, D.L.Tejwani, R.W.Murphy, D.K.McIntyre, K.W.Yang, X.Chao, S.Leith, L.Xiao, Z.Mathur, A.Chen, B.C.Wu, D.R.Traeger, S.C.McKinnon, M.Barrish, J.C.Robl, J.A.Iwanowicz, E.J.Suchard, S.J.Dhar, T.G.

(2006) J Med Chem 49: 6946-6949

  • DOI: 10.1021/jm0610806
  • Primary Citation of Related Structures:  
    2ICA

  • PubMed Abstract: 
  • LFA-1 (leukocyte function-associated antigen-1), is a member of the beta2-integrin family and is expressed on all leukocytes. This letter describes the discovery and preliminary SAR of spirocyclic hydantoin based LFA-1 antagonists that culminated in ...

    LFA-1 (leukocyte function-associated antigen-1), is a member of the beta2-integrin family and is expressed on all leukocytes. This letter describes the discovery and preliminary SAR of spirocyclic hydantoin based LFA-1 antagonists that culminated in the identification of analog 8 as a clinical candidate. We also report the first example of the efficacy of a small molecule LFA-1 antagonist in combination with CTLA-4Ig in an animal model of transplant rejection.


    Organizational Affiliation

    Cerep, 19 avenue du Quebec, 91951 Courtaboeuf cedex, France.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Integrin alpha-LA183Homo sapiensMutation(s): 0 
Gene Names: ITGALCD11A
Find proteins for P20701 (Homo sapiens)
Explore P20701 
Go to UniProtKB:  P20701
NIH Common Fund Data Resources
PHAROS  P20701
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2IC
Query on 2IC

Download CCD File 
A
5-[(5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7-TRIAZASPIRO [4.4]NON-7-YL]METHYL]-3-THIOPHENECARBOXYLICACID
C26 H20 Cl2 N4 O4 S
NXNKJLOEGWSJGI-BKMJKUGQSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
2ICIC50 :  20   nM  PDBBind
2ICIC50:  20   nM  Binding MOAD
2ICIC50:  21   nM  BindingDB
2ICIC50:  20   nM  BindingDB
2ICIC50:  18   nM  BindingDB
2ICIC50:  276   nM  BindingDB
2ICIC50:  280   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.3α = 90
b = 63.4β = 90
c = 63.3γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
PDB_EXTRACTdata extraction
AMoREphasing
CNXrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-12-19
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description