2HZT

Crystal Structure of a putative HTH-type transcriptional regulator ytcD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal Structure of a putative HTH-type transcription regulator ytcD

Madegowda, M.Eswaramoorthy, S.Desigan, K.Burley, S.K.Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative HTH-type transcriptional regulator ytcD
A, B, C, D
107Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: ytcD
Find proteins for O34533 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O34533
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CSU
Query on CSU
A, B, C, D
L-PEPTIDE LINKINGC3 H7 N O5 S2CYS
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.282 
  • R-Value Work: 0.236 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.273α = 90.00
b = 45.521β = 90.00
c = 230.276γ = 90.00
Software Package:
Software NamePurpose
SOLVEphasing
HKL-2000data scaling
SHARPphasing
CNSrefinement
CBASSdata collection
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-08-29
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2012-12-05
    Type: Database references
  • Version 1.4: 2017-09-13
    Type: Refinement description