2HAF

Crystal structure of a putative translation repressor from Vibrio cholerae

PDB DOI: https://doi.org/10.2210/pdb2HAF/pdb

Classification: TRANSLATION REPRESSOR
Organism(s): Vibrio cholerae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-06-12 Released: 2006-07-04
Deposition Author(s): Sugadev, R., Seetharaman, J., Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.88 Å
R-Value Free: 0.288
R-Value Work: 0.241
R-Value Observed: 0.241

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a putative translation repressor from Vibrio cholerae

Sugadev, R., Seetharaman, J., Kumaran, D., Swaminathan, S.

To be published.

Macromolecule Content

Total Structure Weight: 23.42 kDa
Atom Count: 1,445
Modelled Residue Count: 185
Deposited Residue Count: 211
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative translation repressor	A	211	Vibrio cholerae	Mutation(s): 0
UniProt
Find proteins for Q9KUP8 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KUP8 Go to UniProtKB: Q9KUP8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9KUP8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.88 Å
R-Value Free: 0.288
R-Value Work: 0.241
R-Value Observed: 0.241
Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.36	α = 90
b = 59.36	β = 90
c = 236.74	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
CBASS	data collection
HKL-2000	data scaling
SOLVE	phasing
SHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-07-04

Deposition Author(s):

Seetharaman, J.

Swaminathan, S.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2006-07-04
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-02-03
Changes: Database references, Structure summary
Version 1.4: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.