2H75

Crystal Structure of Thioredoxin Mutant D13E in Hexagonal (p61) Space Group


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal Structure of Thioredoxin Mutant D13E in Hexagonal (p61) Space Group

Godoy-Ruiz, R.Gavira, J.A.Ibarra-Molero, B.Sanchez-Ruiz, J.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thioredoxin
A, B
108Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: trxA (fipA, tsnC)
Find proteins for P0AA25 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AA25
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download SDF File 
Download CCD File 
A, B
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.227 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 103.081α = 90.00
b = 103.081β = 90.00
c = 42.588γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
MolProbitymodel building
SADABSdata scaling
SAINTdata scaling
REFMACrefinement
XPREPdata reduction
PROTEUM PLUSdata reduction
MOLREPphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-05-15
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2012-05-02
    Type: Structure summary
  • Version 1.4: 2017-10-18
    Type: Refinement description