2GZB | pdb_00002gzb

Bauhinia bauhinioides cruzipain inhibitor (BbCI)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 
    0.244 (Depositor), 0.271 (DCC) 
  • R-Value Work: 
    0.199 (Depositor), 0.229 (DCC) 
  • R-Value Observed: 
    0.201 (Depositor) 

Starting Model: other
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wwPDB Validation 3D Report Full Report

Validation slider image for 2GZB

This is version 1.5 of the entry. See complete history

Literature

Crystal structure of a novel cysteinless plant Kunitz-type protease inhibitor.

Hansen, D.Macedo-Ribeiro, S.Verissimo, P.Yoo Im, S.Sampaio, M.U.Oliva, M.L.

(2007) Biochem Biophys Res Commun 360: 735-740

  • DOI: https://doi.org/10.1016/j.bbrc.2007.06.144
  • Primary Citation Related Structures: 
    2GZB

  • PubMed Abstract: 

    Bauhinia bauhinioides Cruzipain Inhibitor (BbCI) is a cysteine protease inhibitor highly homologous to plant Kunitz-type inhibitors. However, in contrast to classical Kunitz family inhibitors it lacks cysteine residues and therefore disulfide bridges. BbCI is also distinct in the ability to inactivate enzymes belonging to two different classes, cysteine and serine proteases. Besides inhibiting the cysteine protease cruzipain, BbCI also inhibits cathepsin L and the serine proteases HNE (human neutrophil elastase) and PPE (porcine pancreatic elastase). Monoclinic crystals of the recombinant inhibitor that diffract to 1.7A resolution were obtained using hanging drop method by vapor diffusion at 18 degrees C. The refined structure shows the conservative beta-trefoil fold features of the Kunitz inhibitors. In BbCI, one of the two characteristic S-S bonds is replaced by the water-mediated interaction between Tyr125 and Gly132. In this work we explore the structural differences between Kunitz-type inhibitors and analyze the essential interactions that maintain the protein structural stability preserving its biological function.


  • Organizational Affiliation
    • Departamento de Bioquímica, Universidade Federal de São Paulo-Escola Paulista de Medicina, Rua Três de Maio, 100, 04044-020 São Paulo, SP, Brazil.

Macromolecule Content 

  • Total Structure Weight: 37.92 kDa 
  • Atom Count: 2,795 
  • Modeled Residue Count: 327 
  • Deposited Residue Count: 332 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Kunitz-type proteinase inhibitor BbCI
A, B
166Bauhinia bauhinioidesMutation(s): 0 
UniProt
Find proteins for P83051 (Bauhinia bauhinioides)
Explore P83051 
Go to UniProtKB:  P83051
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP83051
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
IOD

Query on IOD



Download:Ideal Coordinates CCD File
C [auth A]
D [auth A]
E [auth A]
F [auth A]
G [auth A]
C [auth A],
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth B],
K [auth B],
L [auth B]
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free:  0.244 (Depositor), 0.271 (DCC) 
  • R-Value Work:  0.199 (Depositor), 0.229 (DCC) 
  • R-Value Observed: 0.201 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.009α = 90
b = 41.299β = 98.44
c = 63.523γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-07-17
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-08-03
    Changes: Database references
  • Version 1.4: 2024-02-14
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.5: 2024-04-03
    Changes: Refinement description