2GUU

crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of Plasmodium vivax orotidine 5-monophosphate decarboxylase with 6-aza-UMP bound

DONG, A.LEW, J.ZHAO, Y.Sundararajan, E.WASNEY, G.VEDADI, M.KOEIERADZKI, I.EDWARDS, A.M.ARROWSMITH, C.H.WEIGELT, J.SUNDSTROM, M.Pai, E.F.Kotra, L.BOCHKAREV, A.HUI, R.AMANI, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ODcase
A
353N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UP6
Query on UP6

Download SDF File 
Download CCD File 
A
6-AZA URIDINE 5'-MONOPHOSPHATE
6-AZA-UMP
C8 H12 N3 O9 P
LRVZOSYMNMNQFR-SHUUEZRQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.188 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 69.731α = 90.00
b = 82.151β = 90.00
c = 59.739γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
SBC-Collectdata collection
HKL-2000data scaling
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2006-05-16
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description