2GU9 | pdb_00002gu9

Crystal structure of XC5357 from Xanthomonas campestris: A putative tetracenomycin polyketide synthesis protein adopting a novel cupin subfamily structure

PDB DOI: https://doi.org/10.2210/pdb2GU9/pdb

Classification: IMMUNE SYSTEM
Organism(s): Xanthomonas campestris
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2006-04-28 Released: 2006-11-07
Deposition Author(s): Chin, K.-H., Chou, C.C., Wang, A.H.-J., Chou, S.-H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.253 (Depositor)
R-Value Work:
0.220 (Depositor)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2GU9

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of XC5357 from Xanthomonas campestris: A putative tetracenomycin polyketide synthesis protein adopting a novel cupin subfamily structure

Chin, K.-H., Chou, C.C., Wang, A.H.-J., Chou, S.-H.

(2006) Proteins 65: 1046-1050

PubMed: 17029242 Search on PubMed
DOI: https://doi.org/10.1002/prot.21142
Primary Citation Related Structures:
2GU9

Organizational Affiliation

Institute of Biochemistry, National Chung-Hsing University, Taichung, Taiwan 40227, Republic of China.

Macromolecule Content

Total Structure Weight: 24.36 kDa
Atom Count: 1,681
Modeled Residue Count: 221
Deposited Residue Count: 226
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tetracenomycin polyketide synthesis protein	A, B	113	Xanthomonas campestris	Mutation(s): 0
UniProt
Find proteins for Q8PBM3 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8PBM3 Go to UniProtKB: Q8PBM3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8PBM3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.253 (Depositor)
R-Value Work: 0.220 (Depositor)
R-Value Observed: 0.231 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.7	α = 65
b = 43.68	β = 64.9
c = 46.5	γ = 73.4

Software Package:

Software Name	Purpose
ADSC	data collection
HKL-2000	data reduction
CNS	refinement
HKL-2000	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2006-11-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-11-07
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.