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Download EndnoteCrystal structure of a putative lysostaphin peptidase from Vibrio cholerae.
Ragumani, S., Kumaran, D., Burley, S.K., Swaminathan, S.(2008) Proteins 72: 1096-1103
- PubMed: 18498110
- DOI: 10.1002/prot.22095
2GU1
Crystal structure of a zinc containing peptidase from vibrio cholerae
- DOI: 10.2210/pdb2GU1/pdb
- Classification: HYDROLASE
- Organism(s): Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
- Expression System: Escherichia coli
- Deposited: 2006-04-28 Released: 2006-07-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.264
- R-Value Work: 0.230
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Zinc peptidase | A | 361 | Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) | Mutation(s): 0 |
Find proteins for Q9KUL5 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Go to UniProtKB: Q9KUL5 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | A | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.264
- R-Value Work: 0.230
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 49.382 | α = 90.00 |
| b = 85.396 | β = 112.96 |
| c = 53.404 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| HKL-2000 | data scaling |
| ARP/wARP | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| SHARP | phasing |
Entry History
Deposition Data
- Deposited Date: 2006-04-28
- Released Date: 2006-07-04
- Deposition Author(s): Sugadev, R., Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
