2GLJ

crystal structure of aminopeptidase I from Clostridium acetobutylicum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.250 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

crystal structure of aminopeptidase I from Clostridium acetobutylicum

Min, T.Shapiro, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Probable M18-family aminopeptidase 1
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
461Clostridium acetobutylicumMutation(s): 1 
Gene Names: apeA
EC: 3.4.11
Find proteins for Q97K30 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787))
Explore Q97K30 
Go to UniProtKB:  Q97K30
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download Ideal Coordinates CCD File 
AA [auth B] , AB [auth O] , BA [auth B] , BB [auth O] , CA [auth C] , CB [auth P] , DA [auth C] , DB [auth P] , 
AA [auth B],  AB [auth O],  BA [auth B],  BB [auth O],  CA [auth C],  CB [auth P],  DA [auth C],  DB [auth P],  EA [auth D],  EB [auth Q],  FA [auth D],  FB [auth Q],  GA [auth E],  GB [auth R],  HA [auth E],  HB [auth R],  IA [auth F],  IB [auth S],  JA [auth F],  JB [auth S],  KA [auth G],  KB [auth T],  LA [auth G],  LB [auth T],  MA [auth H],  MB [auth U],  NA [auth H],  NB [auth U],  OA [auth I],  OB [auth V],  PA [auth I],  PB [auth V],  QA [auth J],  QB [auth W],  RA [auth J],  RB [auth W],  SA [auth K],  SB [auth X],  TA [auth K],  TB [auth X],  UA [auth L],  VA [auth L],  WA [auth M],  XA [auth M],  Y [auth A],  YA [auth N],  Z [auth A],  ZA [auth N]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A , B , C , D , E , F , G , H , 
A,  B,  C,  D,  E,  F,  G,  H,  I,  J,  K,  L,  M,  N,  O,  P,  Q,  R,  S,  T,  U,  V,  W,  X
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.250 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 121.708α = 89.88
b = 129.68β = 90
c = 222.728γ = 116.68
Software Package:
Software NamePurpose
CNSrefinement
CBASSdata collection
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-13
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2021-02-03
    Changes: Database references, Derived calculations, Structure summary