2GC4

Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.173 

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Literature

Structural comparison of the oxidized ternary electron transfer complex of methylamine dehydrogenase, amicyanin and cytochrome c551i from Paracoccus denitrificans with the substrate-reduced, copper free complex at 1.9 A resolution.

Chen, Z.Durley, R.Davidson, V.L.Mathews, F.S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Methylamine dehydrogenase heavy chain AEIM386Paracoccus denitrificansMutation(s): 0 
Gene Names: mauB
EC: 1.4.99.3 (PDB Primary Data), 1.4.9.1 (UniProt)
Find proteins for P29894 (Paracoccus denitrificans)
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Go to UniProtKB:  P29894
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Methylamine dehydrogenase light chain BFJN131Paracoccus denitrificansMutation(s): 1 
Gene Names: mauA
EC: 1.4.99.3 (PDB Primary Data), 1.4.9.1 (UniProt)
Find proteins for P22619 (Paracoccus denitrificans)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Amicyanin CGKO105Paracoccus denitrificansMutation(s): 0 
Gene Names: mauCami
Find proteins for P22364 (Paracoccus denitrificans)
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Go to UniProtKB:  P22364
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Cytochrome c-L DHLP147Paracoccus denitrificansMutation(s): 0 
Gene Names: moxG
Find proteins for P29899 (Paracoccus denitrificans)
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Go to UniProtKB:  P29899
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.173 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.368α = 90
b = 188.979β = 99.74
c = 128.836γ = 90
Software Package:
Software NamePurpose
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-11-28
    Type: Initial release
  • Version 1.1: 2008-05-05
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2021-03-03
    Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary